PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005700-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HB-other
Protein Properties Length: 110aa    MW: 12774.4 Da    PI: 7.4418
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005700-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.71.9e-182578453
                   -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHH CS
       Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRa 53
                     ++t+eq+e+Le++++++++ps  +r++L +++    +++ rq+kvWFqNrR+
  NNU_005700-RA 25 YVRYTAEQVEALERVYAECPKPSSMRRQQLIRECpilsHIEPRQIKVWFQNRRQ 78
                   6789*************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007113.8151983IPR001356Homeobox domain
SuperFamilySSF466893.29E-162180IPR009057Homeodomain-like
SMARTSM003892.1E-122187IPR001356Homeobox domain
CDDcd000864.41E-132478No hitNo description
PfamPF000464.8E-162578IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-172778IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MAMAVAPHRE SSSGSMNKHL DTGKYVRYTA EQVEALERVY AECPKPSSMR RQQLIRECPI  60
LSHIEPRQIK VWFQNRRQEV VPREAKERSF SITDREQEVN CNEQAIDGGE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253680.13e-47PREDICTED: homeobox-leucine zipper protein REVOLUTA-like
SwissprotQ9SE435e-39REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A061GY243e-41A0A061GY24_THECC; Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 4
STRINGGLYMA12G08080.13e-40(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.13e-40HD-ZIP family protein